PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635196.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 246aa    MW: 26648.7 Da    PI: 8.0786
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.62.1e-38151151100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa+dC++apyf +eq +++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar++dPvyG+v++i++lqqq++ l+a++
  XP_013635196.1  15 PCGACKFLRRKCASDCIFAPYFSSEQgAARFAAIHKVFGASNVSKLLLNVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAYLQAQV 109
                     7***********************9989******************************************************************9 PP

          DUF260  95 allkee 100
                      ++k++
  XP_013635196.1 110 MQMKAQ 115
                     999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.88514116IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3715113IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MATSGNGTTT GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL  60
LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ QVAYLQAQVM QMKAQIAGHQ  120
MSAAGDLRNS SESTHQQYMT WQQTTGSPIG NAYSTAYNHH HQPYYGHVNP NNPVSPQNSL  180
EETFSNTSSD VTTTANVRET QQTGGGVYGQ GGLGFHEGYP NKKRSVSYCN SDLGELQALA  240
LRMMKN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738510.0AB473851.1 Arabidopsis thaliana ASL18 mRNA for ASYMMETRIC LEAVES2-like 18 protein, complete cds.
GenBankAF3453390.0AF345339.1 Arabidopsis thaliana MHK10.15/At2g42430 mRNA, complete cds.
GenBankAF4103340.0AF410334.1 Arabidopsis thaliana At2g42430/MHK10.15 mRNA, complete cds.
GenBankAF4478900.0AF447890.1 Arabidopsis thaliana LOB DOMAIN 16 (LBD16) mRNA, complete cds.
GenBankBT0008660.0BT000866.1 Arabidopsis thaliana At2g42430/MHK10.15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635196.10.0PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB71e-168LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A0D3C5T80.0A0A0D3C5T8_BRAOL; Uncharacterized protein (Fragment)
STRINGBra016877.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-125lateral organ boundaries-domain 16